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Maniphest T10330

scipy having trouble calling numpy
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Description

Python 3.10.4 (main, May 29 2022, 14:26:59) [GCC 12.1.1 20220522] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy.special
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/lib/python3.10/site-packages/scipy/special/__init__.py", line 649, in <module>
    from . import _ufuncs
ImportError: /usr/lib/python3.10/site-packages/scipy/special/_ufuncs.cpython-310-x86_64-linux-gnu.so.avx2: undefined symbol: npy_atan2
>>>

However, np.arctan2(3, 4), which I think is the function in numpy that uses t his symbol, runs just fine.

Revisions and Commits

R2856 scipy
R2856:8c2705fd500b Update to 1.9.0

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Event Timeline

GZGavinZhao created this task.Jul 29 2022, 3:26 AM
GZGavinZhao renamed this task from scipy having trouble using calling numpy to scipy having trouble calling numpy.Jul 29 2022, 3:38 AM
joebonrichie triaged this task as Normal priority.Jul 29 2022, 10:11 AM
joebonrichie moved this task from Backlog to Package Fixes on the Software board.
joebonrichie added a subscriber: joebonrichie.

I'll take a look

joebonrichie added a comment.Aug 2 2022, 4:37 PM

Not sure what is going on with this. Updating scipy to 1.9.0 also means it no longer links to lapack properly, definitely something going funky with the linking...

xulongwu4 added a subscriber: xulongwu4.Aug 2 2022, 6:06 PM
joebonrichie mentioned this in R2189:c1f344f16373: Safety rebuild against cython and drop LTO option.Aug 12 2022, 10:30 AM
joebonrichie closed this task as Resolved by committing R2856:8c2705fd500b: Update to 1.9.0.Aug 12 2022, 10:43 AM
joebonrichie claimed this task.
joebonrichie added a commit: R2856:8c2705fd500b: Update to 1.9.0.
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